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Dataset Information
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Dataset Name:
iPSC (Exp 1) - ALS, SMA and Control (unaffected) subject-derived iPSC lines- ATAC-seq

Dataset Description:
ATAC-Seq was carried out on isolated nuclei obtained from induced Pluripotnent Stem Cells (iPSC) cell lines.  These lines were derived from  ALS, SMA and Control (unaffected) individuals (three of each).

--Data Files in Package:
A-060-14iCTR-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
A-060-25iCTR-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
A-060-28iALS-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
A-060-29iALS-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
A-060-30iALS-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
A-060-32iSMA-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
A-060-77iSMA-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
A-060-83iCTR-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
A-060-83iSMA-004_noMT_sorted_qVal_0.05_peaks.narrowPeak
ATAC-seq iPSC Sample Experimental Metadata_20160911.xlsx

--Metadata Files In Package:
Primary_Cell_Metadata.txt
iPSC_Metadata.txt

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Center-specific Information
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Center-specific Name:
NeuroLINCS

Center-specific Dataset ID:
LDS-1354

Center-specific Dataset Link:


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Assay Information
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Assay Protocol:
/projects/ccs/bd2klincs/Protocols/LDG-1297_Protocol.pdf

Date Updated:

Date Retrieved from Center:

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Metadata Information
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Metadata information regarding the entities used in the experiments is included in the accompanied metadata. A metadata file per entity category is included in the package. For example, the metadata for all the cell lines that were used in the dataset are included in the Cell_Lines_Metadata.txt file.
Descriptions for each metadata field can be found here: http://www.lincsproject.org/data/data-standards/
